PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi03g04330.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 235aa    MW: 25133.8 Da    PI: 5.5611
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi03g04330.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.41.7e-1866116155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      + y+GVr+++ +g+Wv+eIr+p+    +  r++lg+f t+e+Aa a++ a+++l+g
  Vradi03g04330.1  66 PVYRGVRRRS-SGKWVSEIREPR----KpNRIWLGTFATPEMAAIAYDVAALALKG 116
                      68*****888.8*********94....478***********************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.9E-1166116IPR001471AP2/ERF domain
PROSITE profilePS5103222.47167124IPR001471AP2/ERF domain
SMARTSM003806.3E-3367130IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-2167126IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.5E-3067126IPR001471AP2/ERF domain
CDDcd000181.33E-3068126No hitNo description
PRINTSPR003675.5E-116879IPR001471AP2/ERF domain
PRINTSPR003675.5E-11106126IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MVNSFSSHSN SNHNKWLPST VNCHHPTSST FTSDIPYNIT TMRSTNSTTC AASSTGASNG  60
NTGRHPVYRG VRRRSSGKWV SEIREPRKPN RIWLGTFATP EMAAIAYDVA ALALKGKDAE  120
LNFPDSASSL PVPASSAARD IQMAAASAAA AVGAANDALS EGSRGGNVSV SMAQEEFSGG  180
SLNHFVDEDL IFDMPNILVN MAEGMLLSPP RFDNFSATDY DYMDENPNLW GFPY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-1468124360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A3e-1462124263ATERF1
3gcc_A3e-1462124263ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014495657.11e-140PREDICTED: ethylene-responsive transcription factor ERF024
SwissprotQ9SJR03e-58ERF24_ARATH; Ethylene-responsive transcription factor ERF024
TrEMBLA0A0S3RZ271e-122A0A0S3RZ27_PHAAN; Uncharacterized protein
STRINGGLYMA19G37670.11e-110(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56232144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36450.18e-38ERF family protein